CGH-Miner

   Calling Gains and losses in Array CGH data using the CLAC Method

Features:

          "A method for calling gains and losses in array CGH data" (Biostat 2005 6: 45-58)

  • Estimates False Discovery Rate (FDR)  for each array.   

  • Creates a "consensus" call for a group of arrays, with associated  FDR.
  • Developed at Stanford University Labs. Free for all users.
  • Yahoo newsgroup
  • Two versions:
  •               Excel Add-in: Registration for Download; Installation guide;  Manual;                                    

                  R package (clac): Available at CRAN Download (Windows version); Download (Unix version);  

    Related links:

          CGH-Explorer: A program for visualization and analyses of CGH-array data