cghFLasso           

                                                       --- Calling gains and losses in Array CGH 

                       data using the fused lasso method

Features: 

using the "Fused Lasso;" method of Tibshirani and Wang

          " Spatial smoothing and hot spot detection for CGH data using the Fused Lasso "

(Biostatistics, May 19, 2007)

  • Estimates False Discovery Rate (FDR)  for each array.   
  • More accurate and faster than most competing methods. See the above paper for accuracy comparison. Comparative timings
  • Developed at Stanford University and Fred Hutchinson Cancer Research Center. Free for all users.

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